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LDEV-5440 Use transformed version of Autopatch

Transformation from javax to jakarta namespace was made using Eclipse Transformer 0.6.0

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LDEV-5440 Rewrite config files and library references

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LDEV-5386 Use TLS settings compatible with Java 11 and WildFly

LDEV-5386 Fix broken IntelliJ path variables

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LDEV-5260 Upgrade Reactor libraries

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LDEV-5260 Improve Flux backpressure and error handling

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LDEV-5416 Fix inconsistent initial data in fresh build

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SP-10 Auto detect classes and lessons when exporting Peer Review data

SP-9 Add direct Teamwork subcourse link

LDEV-4440 Prevent course creation duplication

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SP-9 Add groups view.

Rewrite SQL queries to produce consistent, weighted averages in all views.

LDEV-5406 Use OAuth instead of JWT as API auth method

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SP-9 Add basic classes and entry point on index page

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LDEV-5401 Add learner-triggered absolute timer to other tools

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Merge origin/v4.7 into LDEV-5399

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Merge remote-tracking branch 'origin/v4.6' into v4.7

# Conflicts:

# idea_project/.idea/runConfigurations/WildFly.xml

# lams_tool_assessment/lams_tool_assessment.eml

# lams_tool_assessment/src/java/org/lamsfoundation/lams/tool/assessment/service/AssessmentServiceImpl.java

# lams_tool_scratchie/conf/language/lams/ApplicationResources.properties

# lams_tool_scratchie/src/java/org/lamsfoundation/lams/tool/scratchie/service/ScratchieServiceImpl.java

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LDEV-5398 Check if creating QB collections is allowed

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LDEV-5200 Fix arranging activities in author with support activities present

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SP-4 Make sure that roles in subcourse are propagated to parent course.

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LDEV-5391 Add closed clustering of groups in gallery walk

  1. … 11 more files in changeset.
LDEV-5386 Modify config files for LAMS v4.8

  1. … 66 more files in changeset.
Merge remote-tracking branch 'origin/v4.6' into v4.7

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LDEV-5386 Library management

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LDEV-5386 Library management

LAI-3 Upgrade libraries to work with Word and PDF documents

Some libraries that we used for working with Word documents are outdated and insecure. It is a good idea to update them and their dependencies so we work with modern code when extracting PDF text for AI summarisation.

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LDEV-5386 IntelliJ configuration file maintenance

  1. … 69 more files in changeset.
LDEV-5386 Library management

LAI-2 Add prompt on blank dialog

LDEV-5386 IntelliJ configuration file maintenance

  1. … 1 more file in changeset.
LDEV-5386 Ignore often modified config files