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LDEV-3275: Use Apache Commons Pool version 1.5.1 -> 1.6 delivered with WildFly.

LDEV-3275: Use Apache Commons Codec version 1.3 -> 1.9 delivered with WildFly.

LDEV-3275: Use Apache Commons Longing version 1.0.4 -> 1.7.4 delivered with WildFly.

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LDEV-3275: Use Apache Commons Lang version 2.6 delivered with WildFly.

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LDEV-3275: Use Apache Commons IO version 2.1 -> 2.4 delivered with WildFly. Previous similar upgrades were: Apache Commons Collections 3.1 -> 3.2.1 Apache Commons BeanUtils 1.6 -> 1.8.3 Saaj 1.2 -> 1.3 JaxRPC same version, but delivered with WildFly.

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    /3rdParty_sources/commons-io/org/apache/commons/io/Charsets.java
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LDEV-3275: Remove commons-digester lib as it does not seem to be used anywhere.

LDEV-3275: Deploy EAR libraries as WildFly modules. In JBoss there were several folders where libraries could be simply copied. In WildFly it is more organised, with module.xml files describing each library. In order not to keep libs in EAR, so only real LAMS code remains there, they are moved to WildFly as modules and get referenced by EAR with META-INF/jboss-deployment-structure.xml.

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    /lams_build/conf/j2ee/jboss-deployment-structure.xml
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    /lams_build/lib/apache-poi/poi.module.xml
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    /lams_build/lib/apache-poi/xmlbeans.module.xml
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    /lams_build/lib/aspirin/aspirin.module.xml
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    /lams_build/lib/aspirin/commons.module.xml
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    /lams_build/lib/aspirin/dnsjava.module.xml
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    /lams_build/lib/autopatch/autopatch.module.xml
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    /lams_build/lib/axis/axis.module.xml
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    /lams_build/lib/axis/wsdl4j.module.xml
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LDEV-3275: Fix Tool Deployer paths.

LDEV-3275: Make Tool Deployer use its own libraries stored in lams_build/tool-deploy instead ones from lams_build/lib as these are getting updated to WildFly versions.

LDEV-3275: Rearrange XML elements so they conform to XSD.

LDEV-3275: Make application.xml use version 6 of XSD.

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    /lams_build/conf/j2ee/application_5.xsd
LDEV-3275: WildFly docs state: "If you modify the MANIFEST.MF file, make sure to include a newline character at the end of the file."

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    /lams_build/conf/j2ee/MANIFEST-template.MF
LDEV-3275: Make Ant use WildFly libraries to build EAR. The libraries have to be exactly listed, instead of using **/*.jar. This is becaus full (not slimmed) WildFly contain other library versions than used by LAMS (located in lams_build/lib). When starting up WildFly libraries would be loaded first and probably foreshadow/clash with versions delivered with EAR.

Also an attempt to correctly deliver MySQL connector lib to WildFly modules dir was committed. Other libraries delivery will follow the same pattern.

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    /lams_build/lib/mysql/mysql-connector-java.module.xml
LDEV-3275: Remove files again after unnecessary reintroduction.

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    /lams_build/lib/mysql/mysql-connector-java-5.0.8-bin.jar
LDEV-3275: Remove javaee.jar reference as it does not seem to be used.

LDEV-3275: Add quartz.jar as a 3rd party module since it is not a part of WildFly distribution. Old version (1.5.3) stays as upgrading to the latest (2.2.1) requires code changes (different API).

LDEV-3275: Add jbossweb.jar (needed for SSO valve and JSON) as a 3rd party module since WildFly is based on Undertow, not JBoss Web server.

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    /lams_build/lib/jboss/jbossweb.jar
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LDEV-3275: Set WildFly server log level to DEBUG.

LDEV-3192 ability to leave several lines comments + committed customized Jinplace plugin

LDEV-3275: Upgrade JMX Remoting to version 2.0.0.

LDEV-3275: Upgrade Xerces to version 2.9.1.

LDEV-3275: Remove unnecessary class paths.

LDEV-3275: Upgrade SLF4J API to version 1.7.2 and SLF4J LogManager to version 1.0.3.

LDEV-3275: Upgrade JSTL API to version 1.2.

LDEV-3275: Upgrade JBoss Logging to version 3.1.4.

LDEV-3275: Upgrade Javassist to version 3.18.1

LDEV-3275: Upgrade JSP API to version 2.3.

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    /3rdParty_sources/jsp-api/javax/servlet/jsp/ErrorData.java
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    /3rdParty_sources/jsp-api/javax/servlet/jsp/HttpJspPage.java
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    /3rdParty_sources/jsp-api/javax/servlet/jsp/JspContext.java
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    /3rdParty_sources/jsp-api/javax/servlet/jsp/JspEngineInfo.java
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    /3rdParty_sources/jsp-api/javax/servlet/jsp/JspException.java
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    /3rdParty_sources/jsp-api/javax/servlet/jsp/JspFactory.java
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    /3rdParty_sources/jsp-api/javax/servlet/jsp/JspPage.java
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    /3rdParty_sources/jsp-api/javax/servlet/jsp/JspTagException.java
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    /3rdParty_sources/jsp-api/javax/servlet/jsp/JspWriter.java
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    /3rdParty_sources/jsp-api/javax/servlet/jsp/PageContext.java
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    /3rdParty_sources/jsp-api/javax/servlet/jsp/el/ELException.java
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    /3rdParty_sources/jsp-api/javax/servlet/jsp/el/Expression.java
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LDEV-3275: Upgrade Servlet API to version 3.1.0.

LDEV-3275: Upgrade Servlet API to version 3.1.0.

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    /3rdParty_sources/jbossweb/javax/ejb/EJB.java
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    /3rdParty_sources/jbossweb/javax/ejb/EJBs.java
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LDEV-3275: Upgrade Hibernate Core to version 4.3.5.

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