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LDEV-3776: Clean up and format all LAMS Java code.

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    ./org/lamsfoundation/lams/tool/deploy/FilesTask.java
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LDEV-3776: Clean up and format all LAMS Java code.

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LDEV-3275: Move lams-dictionary.jar back to lams.ear as it is a module defined in application.xml and these can not reside in lib dir.

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LDEV-3275: Move tool JARs to EAR/lib for automatic detection.

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    ./org/lamsfoundation/lams/tool/deploy/FilesTask.java
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LDEV-3275: Add default constructors as XStream requires them when run on Java 7+. An upgrade to newer (1.4.4+) XStream is advised.

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LDEV-2899 There is no need for /db/sql/updatescripts/** sql updates anymore as we use autopatch ever since. So we can remove according folders

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LDEV-2450 Changing the combined tool language file directories so that they point to a logical name instead of a number, that makes updates much easier.

Basically made minor changes to the build and deploy tool process for combined tools. And a couple of db updates

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Fixing format of file

Merge lams2_3 to head (including things not merged last time due to eclipse's merge wizard not handling the lams2_3 start point as expected)

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Merge lams2_3 into head

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merging improvements from lams2_3_spring_jboss_tune branch

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    ./org/lamsfoundation/lams/tool/deploy/Deploy.java
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use Sun 120 formatting standard

LDEV-1916 fix tool deployer to remove patch table entry when cleaning tool db entries

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LDEV-1916 making toolDBVersionScriptPath value optional for tool deployer for better compatibility with existing tools, since it isn't critical for tool deployment or operation

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LDEV-1916 adding autopatch to tools, including db_version_insert.sql script to tool deployer

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Updatated UpdatToolContextPath to allow for fionas new improvements to the tool deployer for 2.1

LI-161: Replacing / in windows paths to \ to make all the paths consistent.

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LI-161: Generate special version of deploy.xml for tools that has a generic parameter in the place of the drive paths. This is turned on in common.properties (generate for installer) in lams_build. Only use this option if you are writing an installer/updater.

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LI-161: Generate special version of deploy.xml for tools that has a generic parameter in the place of the drive paths. This is turned on in common.properties (generate for installer) in lams_build. Only use this option if you are writing an installer/updater.

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For the 2.1 updaters

This copies adds any exisitng non defualt tool contexts from the database to the web.xmls of central monitoring and learning. It also updates the application.xml if the tool web project is not listed

For 2.1 Updater

Code for adding a non-web module to the application.xml, in this case to add the commons-io-1.4.jar module

Change to tool deployer so that scribe is hidden correctly when it is updated. Ie its valid flag is set in lams_tool and disabled in lams_learning_library

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Added functionality to be used for the installer/updater, it now correctly updates teh web.xml and manifests in the lams_learning, lams-central and lams-monitoring wars. it also updates the application.xml

[LI-57] Added in an extra class to deploy UpdateToolContextPath.jave, if you call its main method with the path to a tool's deploy.xml, it will update the manifests and web.xmls for lams-central.war, lams-learning.war and lams-monitoring.war instead of replacing them with new ones

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    ./org/lamsfoundation/lams/tool/deploy/UpdateToolContextPath.java
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Small change to correct a bug that gave the wrong value for the server version in the database

Tool deployer now finds and runs the update script

Checks the minimum compatible version of the tool from deploy.xml with the existing version in the lams_configuration table, failes if the tool is not compatible

Adds a min server version number to deploy.xml, to check if the tool to be installed is compatible

Closes [LI-53] and nearly closes [LI-50] There is now an option in every tool's build.xml called hideTool, if set to true, the tool's valid flag will be set to 1 or 0 if false when the tool is deployed

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Added option to hide the tool in deploy.xml, hideTool (boolean), now to hide a tool (for instance scribe), you can put a flag in the tool's build.properties hideTool

Also, added a tool update script path, which defaults to "${build.deploy}/sql/updateTo${tool.version}.sql

These will be generated when you do create-deploy-tool ant task